SNP Profiles matching EQX Z

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 Key

 1234567891011121314
_Input profile
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
1._EQX_/Z_[CHA]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
2._GC-01-055-3-10
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
3._GC-01-055-3-10
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
4._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
5._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
6._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
7._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
8._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
9._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
10._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
11._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
12._GC-01-037-2-14
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
13._GC-01-037-2-14
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
14._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
15._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
16._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
17._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
18._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
19._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
20._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
21._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
22._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
23._PA_88_[PER]
_GGCGCTTTCCCCTTCCCCAAGGCCAG
24._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
25._GC-01-037-2-14
CCGGCGCT_CCCCTTCCCCAAGGCCAG
26._GC-01-058-3-13
_GGCGCTTTCCCCTTCCCCAAGGCCAG
27._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
28._GC-01-058-3-13
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
29._RUQ_34
_GGCGCT___TT____CCAG
30._RUQ_34
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
31._PA_88_[PER]
CCGGCGCTTTCCCCTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
CTAACGTTCCGGGGAGCTACCGGTCTAA
1._EQX_/Z_[CHA]
CTAACGTTCCGGGGAGCTACCGGTCTAA
2._GC-01-055-3-10
CTAACGTTCCGGGGAGCTACCGGTCTAA
3._GC-01-055-3-10
CTAACGTTCCGGGGAGCTACCGGTCTAA
4._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
5._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
6._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
7._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
8._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
9._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
10._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
11._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
12._GC-01-037-2-14
CTAACGTTCCGGGGAGCTACCGGTCTAA
13._GC-01-037-2-14
CTAACGTTCCGGGGAGCTACCGGTCTAA
14._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
15._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
16._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
17._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
18._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
19._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
20._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
21._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
22._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
23._PA_88_[PER]
CTAACGTTCCGGGGAGCTACCGGTCTAA
24._PA_88_[PER]
CTAACG_CCGGGGAGCTACCGGTCTAA
25._GC-01-037-2-14
CTAACGTTCCGGGGAGCTACCGGTCTAA
26._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
27._GC-01-058-3-13
CTAACG_CCGGGGAGCTACCGGTCTAA
28._GC-01-058-3-13
CTAACGTTCCGGGGAGCTACCGGTCTAA
29._RUQ_34
____CCGGGG_CTACCGGTCTAA
30._RUQ_34
CTAACGTTCCGGGGAACTACCGGTCTAA
31._PA_88_[PER]
CTAACGTTCCGGGGAACTACCGGTCTAA
 293031323334353637383940  
_Input profile
AAGGAACCGGCCAACTGGACAAGGX_XX_X
1._EQX_/Z_[CHA]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
2._GC-01-055-3-10
AAGGAACCGGCCAACTGGACAAGGX_XX_X
3._GC-01-055-3-10
AAGGAACCGGCCAACTGGACAAGGX_XX_X
4._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
5._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
6._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
7._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
8._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
9._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
10._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
11._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
12._GC-01-037-2-14
AAGGAACCGGCCAACTGGACAAGGX_XX_X
13._GC-01-037-2-14
AAGGAACCGGCCAACTGGACAAGGX_XX_X
14._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
15._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
16._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
17._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
18._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
19._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
20._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
21._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
22._PA_88_[PER]
_GGAACCGGCCAACTGGACAAGGX_XX_X
23._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
24._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X
25._GC-01-037-2-14
AAGGAACCGGCCAACTGGACAAGGX_XX_X
26._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
27._GC-01-058-3-13
AAGGAACCGGCCAACTGGACAAGGX_XX_X
28._GC-01-058-3-13
_GGAACCGGCCAACTGGACAAGGX_XX_X
29._RUQ_34
AA_AACCGGCCAACTGGAC__X_XX_X
30._RUQ_34
AAGGAACCGGCCAACTGGACAAGGX_XX_X
31._PA_88_[PER]
AAGGAACCGGCCAACTGGACAAGGX_XX_X

Input profile: EQX_/Z_[CHA]

 
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Mars Center for Cocoa Science, Brazil
Location: 1310 8
 Dapeng Zhang, 2016

1._EQX_/Z_[CHA]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1310 9
 Dapeng Zhang, 2016

2._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._EQX_/Z_[CHA] GC-01-055-3-10

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

5._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 3
 Dapeng Zhang, 2016

6._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 5
 Dapeng Zhang, 2016

7._PA_88_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1313 8
 Dapeng Zhang, 2016

8._PA_88_[PER]

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1313 10
 Dapeng Zhang, 2016

9._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 11
 Dapeng Zhang, 2016

10._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 16 > F
 Dapeng Zhang, 2016

11._PA_88_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 6 > FP
 Dapeng Zhang, 2016

12._PA_8_[PER] GC-01-037-2-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

13._PA_8_[PER] GC-01-037-2-14

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

16._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

17._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

18._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

19._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

20._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

21._PA_88_[PER] GC-01-058-3-13

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

22._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 14
 Dapeng Zhang, 2016

23._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 1 > FP
 Dapeng Zhang, 2016

24._PA_88_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1313 4 > FP
 Dapeng Zhang, 2016

25._PA_8_[PER] GC-01-037-2-14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

26._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

27._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

28._PA_88_[PER] GC-01-058-3-13

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

29._PA_88_[PER] RUQ_34

identical
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_88_[PER] RUQ_34

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._PA_88_[PER]

98.8 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P50 299
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25